PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0190s00310.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 181aa    MW: 20335.8 Da    PI: 9.7042
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0190s00310.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.57.9e-192978255
               AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                      +y GVr+++ +gr++AeIrdps+   + r++lg+f+ta+eAa a+++a+++++g
  Vang0190s00310.1 29 RYLGVRRRP-WGRYAAEIRDPST---KERHWLGTFDTADEAALAYDRAARAMRG 78
                      588******.**********965...5*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003807.3E-322992IPR001471AP2/ERF domain
CDDcd000184.09E-282985No hitNo description
PROSITE profilePS5103220.8372986IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.2E-292985IPR001471AP2/ERF domain
SuperFamilySSF541715.75E-212986IPR016177DNA-binding domain
PRINTSPR003671.4E-83041IPR001471AP2/ERF domain
PfamPF008475.4E-123078IPR001471AP2/ERF domain
PRINTSPR003671.4E-85268IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009739Biological Processresponse to gibberellin
GO:0010030Biological Processpositive regulation of seed germination
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MNPRTTSSSS KTKKKQTAPE PHHTAWGGRY LGVRRRPWGR YAAEIRDPST KERHWLGTFD  60
TADEAALAYD RAARAMRGSR ARTNFVYADT TPGSSLTPII SPDQQPLPQP DPVSWQRIEV  120
VLEEDDSNNA KLLWLMTAAI CDEEVAIGGF KSGRGRDVDG DLKEILRRRE HKRDLGFIYV  180
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A9e-202785362ATERF1
3gcc_A9e-202785362ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00509DAPTransfer from AT5G13910Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014491082.15e-78PREDICTED: ethylene-responsive transcription factor LEP
SwissprotQ9M6447e-42LEP_ARATH; Ethylene-responsive transcription factor LEP
TrEMBLA0A0L9U7Q91e-78A0A0L9U7Q9_PHAAN; Uncharacterized protein
TrEMBLA0A0S3RW811e-78A0A0S3RW81_PHAAN; Uncharacterized protein
STRINGGLYMA16G05070.22e-56(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39043161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13910.12e-24ERF family protein